Examples
kegg_conv
These examples call the KEGG Conv operation. kegg_conv returns the request URL, column names, and data in a KeggTupleList. Construct a DataFrame from output.data and output.colnames:
output = KEGGAPI.kegg_conv("genes", "ncbi-geneid:948364")
@assert output isa KEGGAPI.KeggTupleList
DataFrame(output.data, output.colnames)1×2 DataFrame
| Row | Target ID | Source ID |
|---|---|---|
| String | String | |
| 1 | ncbi-geneid:948364 | eco:b3809 |
output = KEGGAPI.kegg_conv("ncbi-geneid", "eco:b0002")
@assert output isa KEGGAPI.KeggTupleList
DataFrame(output.data, output.colnames)1×2 DataFrame
| Row | Target ID | Source ID |
|---|---|---|
| String | String | |
| 1 | eco:b0002 | ncbi-geneid:945803 |
output = KEGGAPI.kegg_conv("ncbi-proteinid", ["hsa:10458", "ece:Z5100"])
@assert output isa KEGGAPI.KeggTupleList
DataFrame(output.data, output.colnames)2×2 DataFrame
| Row | source | ncbi-proteinid |
|---|---|---|
| String | String | |
| 1 | hsa:10458 | ece:Z5100 |
| 2 | ncbi-proteinid:NP_001372056 | ncbi-proteinid:AAG58814 |
output = KEGGAPI.kegg_conv("genes", "uniprot:P0A6F9")
@assert output isa KEGGAPI.KeggTupleList
DataFrame(output.data, output.colnames)2×2 DataFrame
| Row | Target ID | Source ID |
|---|---|---|
| String | String | |
| 1 | up:P0A6F9 | eco:b4142 |
| 2 | up:P0A6F9 | ecj:JW4102 |