Utils.jl
PopGenSims.jl/src/Utils.jl
📦 not exported | 🟪 exported by PopGenSims.jl |
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🟪 append!
append!(data::PopData, data2::PopData)
Add the rows of data2
to the end of data
. This will add the samples present
in the second PopData
object to the first PopData
object (mutating it).
Note that this is a simple appending, and you risk corrupting your PopData
if
the two PopData
objects do not have identical loci.
Example
julia> cats = @nancycats
PopData{Diploid, 9 Microsatellite Loci}
Samples: 237
Populations: 17
julia> purrfect_pairs = cross(cats, "N200", "N7", generation = "F1")
PopData{Diploid, 9 Microsatellite Loci}
Samples: 100
Populations: 1
julia> append!(cats, purrfect_pairs);
julia> cats
PopData{Diploid, 9 Microsatellite Loci}
Samples: 337
Populations: 18
🟪 append
append(data::PopData, data2::PopData)
Add the rows of data2
to the end of data
. This will combine the samples present
in both PopData
objects and return a new PopData
object. Note that this is
a simple appending, and you risk corrupting your PopData
if the two PopData
objects do not have identical loci.
Example
julia> cats = @nanycats
PopData{Diploid, 9 Microsatellite Loci}
Samples: 237
Populations: 17
julia> purrfect_pairs = cross(cats, "N200", "N7", generation = "F1")
PopData{Diploid, 9 Microsatellite Loci}
Samples: 100
Populations: 1
julia> merged_cats = append(cats, purrfect_pairs)
PopData{Diploid, 9 Microsatellite Loci}
Samples: 337
Populations: 18
📦 allele_pool
allele_pool(locus::T) where T <: GenoArray
allele_pool(data::PopData)
📦 simulate_sample
simulate_sample(alleles::Dict{String,NTuple}, loc::Vector{String}; ploidy::Int)
Using a global allele pool given by a Dict{loci,alleles} and a list of loci (loc
), simulate
an individual with a given ploidy
. Returns a Vector of genotypes.
Example
julia> cats = @nancycats ;
julia> loc, alleles = allele_pool(cats) ;
julia> simulate_sample(alleles, loc, ploidy = 2)
9-element Array{Array{Int16,1},1}:
[139, 129]
[146, 146]
[145, 141]
[126, 126]
[150, 148]
[148, 140]
[185, 199]
[91, 113]
[208, 208]
📦 feature_req
feature_req
Returns the text: "Please open an Issue or Pull Request on https://www.github.com/pdimens/PopGenSims.jl if you would like this feature implemented"